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HFV Ebola sequence database
 

Models Included in FindModel

Reduced set:

JC : Jukes-Cantor (model 1)
JC+G : Jukes-Cantor plus Gamma (model 3)
F81 : Felsenstein 1981 (model 5)
F81+G : Felsenstein 1981 plus Gamma (model 7)
K80 : Kimura 2-parameter (model 9)
K80+G : Kimura 2-parameter plus Gamma (model 11)
HKY : Hasegawa-Kishino-Yano (model 13)
HKY+G : Hasegawa-Kishino-Yano plus Gamma (model 15)
TrN : Tamura-Nei (model 21)
TrN+G : Tamura-Nei plus Gamma (model 23)
GTR : General Time Reversible (model 53)
GTR+G : General Time Reversible plus Gamma (model 55)

 

Full set:

JC : Jukes-Cantor (model 1)
JC+G : Jukes-Cantor plus Gamma (model 3)
F81 : Felsenstein 1981 (model 5)
F81+G : Felsenstein 1981 plus Gamma (model 7)
K80 : Kimura 2-parameter (model 9)
K80+G : Kimura 2-parameter plus Gamma (model 11)
HKY : Hasegawa-Kishino-Yano (model 13)
HKY+G : Hasegawa-Kishino-Yano plus Gamma (model 15)
TrNef : equal-frequency Tamura-Nei (model 17)
TrNef+G : equal-frequency Tamura-Nei plus Gamma (model 19)
TrN : Tamura-Nei (model 21)
TrN+G : Tamura-Nei plus Gamma (model 23)
K81 : Kimura 3-parameter (model 25)
K81+G : Kimura 3-parameter plus Gamma (model 27)
K81uf : unequal-frequency Kimura 3-parameter (model 29)
K81uf+G : unequal-frequency Kimura 3-parameter plus Gamma (model 31)
TIMef : equal-frequency Transition Model (model 33)
TIMef+G : equal-frequency Transition Model plus Gamma (model 35)
TIM : Transition Model (model 37)
TIM+G : Transition Model plus Gamma (model 39)
TVMef : equal-frequency Transversion Model (model 41)
TVMef+G : equal-frequency Transversion Model plus Gamma (model 43)
TVM : Transversion Model (model 45)
TVM+G : Transversion Model plus Gamma (model 47)
SYM : Symmetrical Model (model 49)
SYM+G : Symmetrical Model plus Gamma (model 51)
GTR : General Time Reversible (model 53)
GTR+G : General Time Reversible plus Gamma (model 55)

 




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