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HFV Ebola sequence database

HFV Sequence Locator Tool

Purpose: This tool has several purposes. It can find the start and end coordinates (relative to the appropriate reference sequence) of your input sequence(s) and show which genomic features each input sequence intersects, along with a graphical view of the location of your sequence(s) relative to the reference sequence. The tool will display both the nucleotide sequence and protein translation of your input as it aligns to the reference sequence. It will also check the reverse complement of your input sequence, and report the orientation with the best match.

How to use: To find the location for your sequence(s), either upload a sequence file, or paste in the box below. All common formats, as well as raw sequences, are accepted. Then select an organism from our database; your sequence(s) will be located with respect to the genome of that organism.


Find the location of a sequence
Paste your input here
or upload your file

Questions or comments? Contact us at hfv-info@lanl.gov