Site Map & Tools

Search Interface: Filoviruses retrieves filovirus virus sequences

Search Interface: HFV retrieves sequences for all hemorrhagic fever viruses

Advanced Search creates a customized search interface

Filovirus Premade Alignments are manually optimized alignments for viruses that belong to Ebolavirus, Marburgvirus, and Cuevavirus genera

HFV Premade Alignments are manually optimized genus reference alignments for all hemorrhagic fever viruses

Ebolavirus and Marburgvirus Immunology Resources provides information about filovirus T-cell epitopes and antibodies

Epitope Maps show the location of ebolavirus and marburgvirus epitopes, relative to reference sequences

Global Outbreak Maps show global distribution of Ebola & Marburg diseases

Geography Search: Filoviruses retrieves filovirus sequences based on geographical distribution

Geography Search: HFV retrieves HFV sequences based on geographical distribution

Genome Coordinate Resources provides genome coordinates and spreadsheet data for features of filovirus sequences

Filovirus Coordinates and Naming provides information about the ebolavirus reference sequence and the sequence naming systems used for all filoviruses on this website

AnalyzeAlign shows weblogos, calculates frequency by position, and finds variants in an alignment

CodonAlign takes nucleotide alignment and returns codon alignment and translates to protein sequences

Consensus computes a customizable consensus

Gapstreeze removes columns with more than a given % of gaps

ElimDupes removes duplicate sequences from an alignment

HFValign aligns your sequence(s) using either the multiple alignment program MAFFT, or using the appropriate hidden Markov model.

PeptGen generates overlapping peptides from a protein sequence

Pixel generates a PNG image of an alignment using 1 or more colored pixel(s) for each residue

QuickAlign aligns short nucleotide or protein sequences (e.g., primers, epitopes) to our prebuilt genome or protein alignments, or to a user alignment

Sequence Locator aligns your nucleotide or protein sequence to a reference genome and shows feature and coordinate information

Translate nucleotide sequences to 1-letter amino acids

Ebola Genome Browser provides interactive views of the ebolavirus genome and proteome

Genome Mapper creates a genomic feature map for any HFV organism

Format Converter converts between 18 standard sequence formats

SeqPublish is to make publication-ready alignments

HFV BLAST finds sequences similar to yours in the HFV database.

Highlighter shows matches, mismatches and mutations in an aligned set of nucleotide sequences.

N-Glycosite find potential N-linked glycosylation sites in a protein alignment

PCOORD multidimensional analysis of sequence variation

SNAP calculates synonymous/non-synonymous substitution rates

VESPA detects signatures: residues with different frequencies in two sequence sets

FindModel finds which evolutionary model best fits your sequences

PhyloPlace reports phylogenetic relatedness of query sequence with reference sequences in known clades.

PhyML interface creates and displays a Maximum-Likelihood tree using the PhyML code; many evolutionary models can be specified

Rainbow Tree color codes phylogenetic tree branches according to labels in the sequence names

TreeMaker generates a quick-and-dirty phylogenetic tree

TreeRate calculates branch lengths between internal and end nodes based on a Newick treefile

External Resources links to additional resources on other websites