Search Interface: Filoviruses
retrieves filovirus virus sequences
Search Interface: HFV
retrieves sequences for all hemorrhagic fever viruses
Advanced Search
creates a customized search interface
Filovirus Premade Alignments
are manually optimized alignments for viruses that belong to Ebolavirus, Marburgvirus, and Cuevavirus genera
HFV Premade Alignments
are manually optimized genus reference alignments for all hemorrhagic fever viruses
Ebolavirus and Marburgvirus Immunology Resources
provides information about filovirus T-cell epitopes and antibodies
Epitope Maps
show the location of ebolavirus and marburgvirus epitopes, relative to reference sequences
Global Outbreak Maps
show global distribution of Ebola & Marburg diseases
Geography Search: Filoviruses
retrieves filovirus sequences based on geographical distribution
Geography Search: HFV
retrieves HFV sequences based on geographical distribution
Genome Coordinate Resources
provides genome coordinates and spreadsheet data for features of filovirus sequences
Filovirus Coordinates and Naming
provides information about the ebolavirus reference sequence and the sequence naming systems used for all filoviruses on this website
AnalyzeAlign
shows weblogos, calculates frequency by position, and finds variants in an alignment
CodonAlign
takes nucleotide alignment and returns codon alignment
and translates to protein sequences
Consensus
computes a customizable consensus
Gapstreeze
removes columns with more than a given % of gaps
HFValign
aligns your sequence(s) using either the multiple alignment
program MAFFT, or using the appropriate hidden Markov model.
PeptGen
generates overlapping peptides from a protein sequence
Pixel
generates a PNG image of an alignment using 1 or more colored pixel(s) for each residue
QuickAlign
aligns short nucleotide or protein sequences (e.g., primers, epitopes) to our prebuilt genome or protein alignments, or to a user alignment
Sequence Locator
aligns your nucleotide or protein sequence to a reference genome
and shows feature and coordinate information
Translate
nucleotide sequences to 1-letter amino acids
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Ebola Genome Browser
provides interactive views of the ebolavirus genome and proteome
Genome Mapper
creates a genomic feature map for any HFV organism
Format Converter
converts between 18 standard sequence formats
SeqPublish
is to make publication-ready alignments
HFV BLAST
finds sequences similar to yours in the HFV database.
Highlighter
shows matches, mismatches and mutations in an aligned set of nucleotide sequences.
N-Glycosite
find potential N-linked glycosylation sites in a protein alignment
PCOORD
multidimensional analysis of sequence variation
SNAP
calculates synonymous/non-synonymous substitution rates
VESPA
detects signatures: residues with different frequencies in two sequence sets
FindModel
finds which evolutionary model best fits your sequences
PhyloPlace
reports phylogenetic relatedness of query sequence with reference sequences in known clades.
PhyML interface
creates and displays a Maximum-Likelihood tree using the PhyML code;
many evolutionary models can be specified
Rainbow Tree
color codes phylogenetic tree branches according to labels in the sequence names
TreeMaker
generates a quick-and-dirty phylogenetic tree
TreeRate
calculates branch lengths between internal and end nodes based on a Newick treefile
External Resources
links to additional resources on other websites
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