hfv top banner
HFV Ebola sequence database

PeptGen Peptide Generator

Purpose: To generate sets of overlapping peptides that can be used for peptide design and epitope mapping.

How to use: Paste or upload amino acid sequence(s) in any valid sequence format. Change the default values for the other parameters as needed. You may want to use an HIV consensus sequence as input. For additional details, see PeptGen Explanation.

Paste your input here
[SAMPLE INPUT - single sequence]
[SAMPLE INPUT - alignment]
or upload your file
If you are submitting an alignment check this box

Make peptides of length C-terminal forbidden amino acids *
Overlap peptides by N-terminal forbidden amino acids *
Shorten by Apply proline rule * Yes No
Lengthen by Calculate hydropathy * Yes No
    Color amino acids Yes No
* For the first sequence only in alignment input

Output style Stairstepping aligned
Simple style classic new
Duplicate peptides * flag remove
Gaps remove save
* Duplicity within a peptide block

Questions or comments? Contact us at hfv-info@lanl.gov